vendor |
Organization that developed/provides the experimental technology or assay system. |
10x_Genomics, Bio-Rad, Parse_Biosciences, unknown |
10x_Genomics |
assay |
Specific experimental protocol or assay used to generate the biological data. |
10x_Multiome, 10x_3prime_GEX, 10x_ATAC, snm3C-seq, scRNA-seq, scATAC-seq |
10x_Multiome |
sequencing_platform |
Instrument/platform used to sequence the resulting libraries. This is distinct from the assay technology. |
Illumina, PacBio, Oxford_Nanopore, unknown |
Illumina |
resolution |
Biological unit at which the measurements are represented. |
bulk, single_cell, single_nucleus, cell_type, pseudo_bulk_cell_type |
single_nucleus |
modalities |
Molecular measurement(s) represented in the dataset. Can contain multiple values. |
RNA, ATAC, DNA_methylation, 3D_genome, protein, etc. |
[RNA, ATAC] |
data_types |
Specific type of data within each modality. Can contain multiple values. |
gene_expression, peak_counts, fragments, CpG_methylation, chromatin_contacts, etc. |
[gene_expression, peak_counts] |
file_format |
Format in which the data are stored. |
h5ad, h5, mtx, tsv, bed, bedGraph, pairs, bigWig, etc. |
h5ad |
processing_level |
Degree to which the raw sequencing data have been processed. |
raw, processed, normalized, annotated, aligned, RPKM_normalized |
processed |
dataset |
The dataset the resource belongs to. |
zemke2023Conserved, liu2026Multiomics |
liu2026Multiomics |
species |
The species the resource belongs to. |
human, macaque, marmoset, mouse |
human |
brain_region |
The brain region. |
m1, mop |
m1 |