type: fragment_score
table:
  filename: abcc10d49a1c92085f56c60edc0af520d9a31fe9.gz
  format: tabix
  header_mode: none
  zero_based: true
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: cell
  column_index: 3
  type: str
  histogram:
    type: categorical
    plot_function: fragment_count_dist_plot.py:plot_fragment_per_cell_count
    displayed_values_count: 5
- id: count
  column_index: 4
  type: int
  histogram:
    type: number
    view_range:
      min: 1
      max: 20
    number_of_bins: 20
meta:
  summary: ATAC fragments for human from library abcc10d49a1c92085f56c60edc0af520d9a31fe9
  description: '

    [Johansen et al., Cross-species consensus atlas of the primate basal ganglia,
    bioRxiv, 2025](https://www.biorxiv.org/content/10.64898/2025.12.15.694496v1)


    Downloaded from: [s3://hmba-bican-sharing-802451596237-us-west-2/BasalGanglia_pre-print_ATAC](s3://hmba-bican-sharing-802451596237-us-west-2/BasalGanglia_pre-print_ATAC).

    '
  labels:
    assay: 10x_Multiome
    library: abcc10d49a1c92085f56c60edc0af520d9a31fe9
    species: human
    dataset: johansen2025Crossspecies
    vendor: 10x_Genomics
    sequencing_platform: Illumina
    brain_region: basal ganglia
    resolution: single_nucleus
    modalities: ATAC
    processing_level: aligned
    data_types: fragments
    reference_genome: reference/Human/genome/ucsc-hg38