AnnData object with n_obs × n_vars = 313033 × 35787 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/johansen2025Crossspecies/comprehensive_expression_matrix/Marmoset/Marmoset_HMBA_basalganglia_AIT_pre-print.h5ad'
    obs: 'Neighborhood', 'Class', 'Subclass', 'Group', 'Cluster', 'cluster_id', 'cell_type_ontology_term', 'load_id', 'donor_id', 'assay', 'assay_ontology_term_id', 'organism', 'organism_ontology_term_id', 'development_stage', 'anatomical_region', 'anatomical_region_merged', 'anatomical_region_ontology_term_id', 'brain_region_ontology_term_id', 'self_reported_sex', 'self_reported_sex_ontology_term_id', 'self_reported_ethnicity', 'self_reported_ethnicity_ontology_term_id', 'disease', 'disease_ontology_term_id', 'suspension_type', 'is_primary_data', 'RNA_library_creation_date', 'RNA_library_prep_set', 'RNA_library_name', 'RNA_tapestation_avg_size_bp', 'RNA_library_num_cycles', 'RNA_lib_quantification_ng', 'RNA_library_pool_name', 'ATAC_library_creation_date', 'ATAC_library_prep_set', 'ATAC_library_name', 'ATAC_tapestation_avg_size_bp', 'ATAC_library_num_cycles', 'ATAC_lib_quantification_ng', 'ATAC_library_pool_name', 'RNA_r1_index', 'RNA_r2_index', 'ATAC_index', 'total_counts', 'total_genes', 'doublet_score', 'organism_sci', 'accession_group', 'embedding_set', 'CL:ID_group', 'tokens_group', 'display_order_group', 'literature_support', 'literature_name_short', 'literature_name_long', 'curated_markers', 'color_hex_group', 'color_group', 'accession_subclass', 'CL:ID_subclass', 'tokens_subclass', 'display_order_subclass', 'color_hex_subclass', 'color_subclass', 'accession_class', 'CL:ID_class', 'tokens_class', 'display_order_class', 'color_hex_class', 'color_class', 'accession_neighborhood', 'CL:ID_neighborhood', 'tokens_neighborhood', 'display_order_neighborhood', 'color_hex_neighborhood', 'color_neighborhood', 'cell_barcode', 'barcoded_cell_sample_label', 'alignment_job_id', 'alignment_job_database'
    var: 'highly_variable', 'highly_variable_rank', 'means', 'variances', 'variances_norm', 'highly_variable_nbatches', 'ensembl_id'
    uns: 'batch_condition', 'cluster_algorithm', 'cluster_info', 'dataset_purl', 'default_embedding', 'filter', 'gene_annotation_version', 'hierarchy', 'hvg', 'log1p', 'mode', 'neighbors', 'reference_genome', 'schema_version', 'title'
    obsm: 'X_scVI', 'X_umap'
    obsp: 'connectivities', 'distances'
    layers: None (.X), 'UMIs'