type: ann_data
file: Xenium-CJ23.56.004-BG-raw.h5ad
meta:
  summary: Expression matrix Xenium-CJ23.56.004-BG-raw
  description: '

    [Johansen et al., Cross-species consensus atlas of the primate basal ganglia,
    bioRxiv, 2025](https://www.biorxiv.org/content/10.64898/2025.12.15.694496v1)


    Downloaded from: [https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-BG_dataset.html](https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-BG_dataset.html).

    '
  labels:
    directory: HMBA-Xenium-CJ23.56.004-BG
    release_date: '20250630'
    species: Marmoset
    measure: raw
    dataset: johansen2025Crossspecies
    vendor: 10x_Genomics
    sequencing_platform: Illumina
    brain_region: basal ganglia

    assay: Xenium
    resolution: single_cell
    modalities: RNA
    data_types: gene_expression
    processing_level: processed_log2

    reference_genome: reference/Marmoset/genome/calJac240_pri
    gene_models: reference/Marmoset/gene_models/calJac240_pri_NCBI_RefSeq