type: fragment_score
table:
  filename: 4DNFI4AGCNE4.tsv.gz
  format: tabix
  header_mode: none
  zero_based: true
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: cell
  column_index: 3
  type: str
  histogram:
    type: categorical
    plot_function: fragment_count_dist_plot.py:plot_fragment_per_cell_count
    displayed_values_count: 5
- id: count
  column_index: 4
  type: int
  histogram:
    type: number
    view_range:
      min: 1
      max: 20
    number_of_bins: 20
meta:
  summary: ATAC fragments for 4B_rep1_deep from zemke2023Conserved.
  description: '


    [Zemke, et al, Conserved and divergent gene regulatory programs of the

    mammalian neocortex, Nature 2023.](https://www.nature.com/articles/s41586-023-06819-6)


    Downloaded from: [https://data.4dnucleome.org/publications/8d4e8d7c-b98f-4857-a4c1-274dfc39817a/#expsets-table](https://data.4dnucleome.org/publications/8d4e8d7c-b98f-4857-a4c1-274dfc39817a/#expsets-table).

    '
  labels:
    assay: 10x_Multiome
    dataset: zemke2023Conserved
    reference_genome: reference/Mouse/genome/GRCm38
    species: mouse
    vendor: 10x_Genomics
    sequencing_platform: Illumina
    resolution: single_nucleus
    modalities: ATAC
    processing_level: aligned
    brain_region: mop
    data_types: fragments
    donor_id: Mop_4B
    sample_id: Mop_4B_rep1
    age: P56
    sex: M
    neun_enriched: 'no'