type: fragment_score
table:
  filename: GSM8549637_hc46426_atac_fragments.tsv.gz
  format: tabix
  header_mode: none
  zero_based: true
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: cell
  column_index: 3
  type: str
  histogram:
    type: categorical
    plot_function: fragment_count_dist_plot.py:plot_fragment_per_cell_count
    displayed_values_count: 5
- id: count
  column_index: 4
  type: int
  histogram:
    type: number
    view_range:
      min: 1
      max: 20
    number_of_bins: 20
meta:
  summary: ATAC fragments for hc46426 from zemke2024Epigenetic.
  description: '

    [Zemke et al., Epigenetic and 3D genome reprogramming during the aging of human
    hippocampus, bioRxiv, 2024](https://www.biorxiv.org/content/10.1101/2024.10.14.618338v1)


    Downloaded from: [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278576](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278576).

    '
  labels:
    assay: 10x_Multiome
    individual_id: hc46426
    run_id: GSM8549637
    dataset: zemke2024Epigenetic
    reference_genome: reference/Human/genome/ucsc-hg38
    species: human
    vendor: 10x_Genomics
    sequencing_platform: Illumina
    resolution: single_nucleus
    modalities: ATAC
    processing_level: aligned
    brain_region: hippocampus
    data_types: fragments