Resource
| Id | reference/Mouse/gene_models/GRCm39_basic |
|---|---|
| Type | gene_models |
| Version | 0 |
| Summary |
Mouse (Mus musculus) gene models
|
| Description |
GENCODE basic gene annotation for the house mouse (Mus musculus), release M39, on the GRCm39 genome assembly. Downloaded from: https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M39/gencode.vM39.basic.annotation.gtf.gz Download date: 8/31/2026 Downloaded GTF is transformed to GAIn format by: to_gpf_gene_models_format gencode.vM39.basic.annotation.gtf.gz gencode.vM39.basic.annotation.txt.gz |
| Labels |
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Configuration
Gene models file: gencode.vM39.basic.annotation.txt.gz
Format: default
Statistics
Chromosome statistics
| Transcript number | Protein coding transcript number | Gene number | Protein coding gene number | |
|---|---|---|---|---|
| Global | 249,536 | 167,378 | 77,986 | 22,244 |
| chr1 | 15,112 | 9,418 | 4,970 | 1,208 |
| chr2 | 18,993 | 13,507 | 5,468 | 1,820 |
| chr3 | 12,500 | 7,913 | 4,059 | 991 |
| chr4 | 14,844 | 10,397 | 4,329 | 1,304 |
| chr5 | 15,081 | 9,933 | 4,721 | 1,255 |
| chr6 | 12,891 | 8,528 | 4,283 | 1,259 |
| chr7 | 19,249 | 13,821 | 5,916 | 2,032 |
| chr8 | 12,633 | 8,467 | 3,663 | 1,026 |
| chr9 | 13,687 | 9,591 | 3,955 | 1,209 |
| chr10 | 11,750 | 7,641 | 3,726 | 1,004 |
| chr11 | 18,056 | 13,608 | 4,497 | 1,616 |
| chr12 | 9,694 | 5,773 | 3,427 | 785 |
| chr13 | 9,876 | 5,599 | 3,522 | 835 |
| chr14 | 10,128 | 6,427 | 3,464 | 1,004 |
| chr15 | 9,795 | 6,693 | 2,837 | 783 |
| chr16 | 7,999 | 5,363 | 2,422 | 676 |
| chr17 | 11,695 | 8,363 | 3,314 | 1,057 |
| chr18 | 6,980 | 4,539 | 2,099 | 510 |
| chr19 | 7,741 | 5,691 | 2,029 | 723 |
| chrX | 8,376 | 5,681 | 3,216 | 980 |
| chrY | 2,419 | 412 | 2,033 | 154 |
| chrM | 37 | 13 | 37 | 13 |
Files
| Filename | Size | md5 |
|---|---|---|
| gencode.vM39.basic.annotation.gtf.gz | 52.68 MB | 6fa66a367aaf298d2a2b3e45249096fa |
| gencode.vM39.basic.annotation.txt.gz | 13.24 MB | 6d6974140af86218d5621d4d72cf1f2d |
| genomic_resource.yaml | 658.0 B | d7b50d2eade2ef1efa7ac88938ad7e4f |
| statistics/ |