Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0c3c96794972b6c4324ca5724387eaac3e92772ccontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0c3c96794972b6c4324ca5724387eaac3e92772c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTTGGTGTAAAGCAA-2235_F03, CATCAATCAATCGCAC-2235_F03, TGTGCGGGTACCGGAT-2235_F03, GCGCGATTCCATCAGG-2235_F03, GCTTTGTGTATACTGG-2235_F03 (top 5 of 4494 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
0c3c96794972b6c4324ca5724387eaac3e92772c.gz 1.39 GB a1dde0d473bd1fbb9f89b93c27e9cdb1
0c3c96794972b6c4324ca5724387eaac3e92772c.gz.tbi 899.11 KB dc59036f7bb6155c37fab35eb3649647
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 737a2749e4b5d556e6a89c97a5f807f7
statistics/