Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0cb93024172c5b8b258cb5dee46df02a82242863content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0cb93024172c5b8b258cb5dee46df02a82242863
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGATTGCGTTCGGTAA-2433_1_G04, CCCTAATGTAACCACA-2433_1_G04, TTTAGCTTCACCATTT-2433_1_G04, ATTCCGGAGACAGGCG-2433_1_G04, GATGCATTCAGCTAAC-2433_1_G04 (top 5 of 4558 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
0cb93024172c5b8b258cb5dee46df02a82242863.gz 1.44 GB f4a6e798a708ae84469fcac61a67ac1b
0cb93024172c5b8b258cb5dee46df02a82242863.gz.tbi 918.48 KB 1c6fee556ea2620b9c8e2296f280269f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 232884e636b2c968a49c6df149982879
statistics/