Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/0f00e9a2defd21a6c6a5e98687f93df14a272194content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 0f00e9a2defd21a6c6a5e98687f93df14a272194
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTCTATGCAATTTAGC-2233_1_D02, TTTAAGGTCTTGCTAT-2233_1_D02, CTTATGTTCGCAACAT-2233_1_D02, TGGACCGGTGTGCACG-2233_1_D02, CTCACAACAAAGCGCA-2233_1_D02 (top 5 of 3550 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
0f00e9a2defd21a6c6a5e98687f93df14a272194.gz 1.5 GB 37383ff0f30a3f418d6284cfa14d2b10
0f00e9a2defd21a6c6a5e98687f93df14a272194.gz.tbi 933.08 KB 756fc7edf1690b352a193227eb22423a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB b087122b7b4627abc856db6cb0f18833
statistics/