Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/10561fec5702b576727b687f4ad82ddcc3392312content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 10561fec5702b576727b687f4ad82ddcc3392312
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGTTGCGTCGGTTTCC-2495_A08, GATGAGGGTGATTACG-2495_A08, GTTAGGCGTATTACCC-2495_A08, TGAAGCAAGCAAGACA-2495_A08, CAGGGCTTCCTTGAGG-2495_A08 (top 5 of 4526 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
10561fec5702b576727b687f4ad82ddcc3392312.gz 2.25 GB 213a2fd14507e48f342277b858b54bbd
10561fec5702b576727b687f4ad82ddcc3392312.gz.tbi 1.11 MB 6641ddfd0cbd63f43c710daf79af0be8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 579573c4ff92554b1450e75efea4e45b
statistics/