Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/10d00cb33bb4f4f2c8423108179cec82390ec10econtent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 10d00cb33bb4f4f2c8423108179cec82390ec10e
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGTGTGTCAGGCATGA-1042_A06, TGTGATCAGTGAGCGG-1042_A06, TGCTTGTGTTGCAATG-1042_A06, TCAGCCTTCCTCAGTC-1042_A06, TTGTCCGGTTCTTTAG-1042_A06 (top 5 of 4416 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
10d00cb33bb4f4f2c8423108179cec82390ec10e.gz 2.1 GB e7c0a45da8bbde4c61f748bf939445c5
10d00cb33bb4f4f2c8423108179cec82390ec10e.gz.tbi 1.09 MB b20d78d63763d5d97fc08617755a576d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB c1f0a57bb529c268307a8629a0cd16cf
statistics/