Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/10d57aeed611a5e3383f249bf760925cc67eef14content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 10d57aeed611a5e3383f249bf760925cc67eef14
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTGATGAAGACAAACG-2530_A02, TGTCCTTCAATCCCTT-2530_A02, AGGATGCAGGCCATCA-2530_A02, CGTGCTGCAAAGGTAC-2530_A02, AGGACGTAGCATTATG-2530_A02 (top 5 of 2495 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
10d57aeed611a5e3383f249bf760925cc67eef14.gz 1.09 GB 46429f07d7bcf894e244f31b390b4ecf
10d57aeed611a5e3383f249bf760925cc67eef14.gz.tbi 806.57 KB ecacd35ebefef83058fc0f21ed21a586
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 699cf666e0b6e2d91e1fb586cabd1a96
statistics/