Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/116779e51ff04e5a250c4610737fc5f4a2750a8acontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 116779e51ff04e5a250c4610737fc5f4a2750a8a
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGACCTTGTTGTTGGA-2523_C07, TCAATCGCATAAGCAA-2523_C07, TTTGGTGCAGGTTAAA-2523_C07, AAGCGGGTCCCTCAAC-2523_C07, ACTCCTCAGAGGAGTC-2523_C07 (top 5 of 2797 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
116779e51ff04e5a250c4610737fc5f4a2750a8a.gz 1.53 GB 7c14bd8a11f523ec41a6be3f228c310d
116779e51ff04e5a250c4610737fc5f4a2750a8a.gz.tbi 949.2 KB a99f0f1ee1b3b7511cc7c32239da2258
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 5a2073debf7ad48b4e17e37fb964339e
statistics/