Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/12af51e2b66778a956ef18abf9cf4fb2ec0db070content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 12af51e2b66778a956ef18abf9cf4fb2ec0db070
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTAATCGAGCATTATG-2341_C02, CCACTTGGTTGGTGAC-2341_C02, CTTTCTTGTGTGCACG-2341_C02, CAGGTTAGTATGGTGC-2341_C02, AAGAACAGTGTTGCAA-2341_C02 (top 5 of 4353 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
12af51e2b66778a956ef18abf9cf4fb2ec0db070.gz 2.21 GB d8a8e8a80cd067981c3fdc21764a3afa
12af51e2b66778a956ef18abf9cf4fb2ec0db070.gz.tbi 1.16 MB e2f11967214ef118b4c51f180fbe8f1e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB e1792abc98773b0c338827e8b38009c6
statistics/