Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1965a6e8d3862f032a8830db0fd306aa58f62f67content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1965a6e8d3862f032a8830db0fd306aa58f62f67
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGAATCTGTGTGCACG-2256_A03, GAGTCAAAGAGGAAGG-2256_A03, ATGTTTGAGCATGTCG-2256_A03, CAGGTCCAGGCATGTT-2256_A03, GTACTGGTCGTTATAG-2256_A03 (top 5 of 5213 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
1965a6e8d3862f032a8830db0fd306aa58f62f67.gz 3.33 GB e8380ced9acf345156c05efbc3d2ce2c
1965a6e8d3862f032a8830db0fd306aa58f62f67.gz.tbi 1.4 MB a5ac6d7e45dd4c046042e5b9c5b9b40c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 74ff95cd466820ee357a86abece57c39
statistics/