Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1a1cd2349f728451320c9e7dd535435a918960cacontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1a1cd2349f728451320c9e7dd535435a918960ca
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGAAGGTGTAAATTGC-2370_A03, TAGTAAGCAGCCGCTA-2370_A03, TAGTGGCGTTGTTGGA-2370_A03, TGAGGAGGTTCACCCA-2370_A03, TGAGCAAAGGTCGAGG-2370_A03 (top 5 of 5073 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
1a1cd2349f728451320c9e7dd535435a918960ca.gz 2.53 GB a85e09d5ec81e37c3c58086562591914
1a1cd2349f728451320c9e7dd535435a918960ca.gz.tbi 1.19 MB d89302b1ed89c352d0c9587aa3ea9de4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB a629b8bd1e8e60b0a5e6fe5367a716a2
statistics/