Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1a3e59f58c151d48b8de7702706fa04b68812aafcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1a3e59f58c151d48b8de7702706fa04b68812aaf
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCGCTAGGTTTCGCGC-2018_C01, GTTTCAGCACCAGGTT-2018_C01, TTTATGGAGGGTCTAT-2018_C01, TAGGTTATCCTGGCTT-2018_C01, CCGTTATGTTGAGCCG-2018_C01 (top 5 of 6500 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
1a3e59f58c151d48b8de7702706fa04b68812aaf.gz 2.51 GB 5922b03c0d2d1cc7ad25f93c16830cf8
1a3e59f58c151d48b8de7702706fa04b68812aaf.gz.tbi 1.2 MB fd0da024e7acebe7e51ddb3db7e6c5ef
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 80bfa27881f0816799c1e746cd5228de
statistics/