Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1bd1ba397395c801aaeff6e51c426c77ed14c44econtent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1bd1ba397395c801aaeff6e51c426c77ed14c44e
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGATACTTCACTAAGC-2357_A03, TGTTGCACAATATGGA-2357_A03, TGAACAACAGCTTAGC-2357_A03, CAATCGCCAGCAGGTA-2357_A03, TTAAGGTGTGTGCACG-2357_A03 (top 5 of 5579 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
1bd1ba397395c801aaeff6e51c426c77ed14c44e.gz 2.19 GB 589a212815a56924ddfa9555109147af
1bd1ba397395c801aaeff6e51c426c77ed14c44e.gz.tbi 1.11 MB 644a198579aebb71c2cdda44f350000b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB e31da5392395d4e3dabf16952099ef58
statistics/