Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1d816c9ddce129a62def6dd8e869e4a6e4435f28content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1d816c9ddce129a62def6dd8e869e4a6e4435f28
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTACCGGTTTACGTC-2531_C03, CAGCTCAAGGCTAGAA-2531_C03, GCTCACAAGTGAGGGT-2531_C03, TCGCGAGGTGACCTGG-2531_C03, AATCCTAAGTATCGCG-2531_C03 (top 5 of 3960 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
1d816c9ddce129a62def6dd8e869e4a6e4435f28.gz 2.72 GB 0f3757561008394a2ed58ec004d1a670
1d816c9ddce129a62def6dd8e869e4a6e4435f28.gz.tbi 1.26 MB 9bc1b922f6d1704919dd1521707b3914
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 4f691d193c93938dd730359b7e42cd00
statistics/