Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/1e9b09156ab1a6545caf741f5b634afda2d8e093content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 1e9b09156ab1a6545caf741f5b634afda2d8e093
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GATTGCGTCACAGGAA-2229_D06, TACTGCACAACGTGCT-2229_D06, ATGACCAGTAACCTAG-2229_D06, GGCAAATCACGAATCC-2229_D06, GTGTCCAAGTTACCGG-2229_D06 (top 5 of 4940 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
1e9b09156ab1a6545caf741f5b634afda2d8e093.gz 2.83 GB 1d318fc66d39b8f41f860e06023fa3d3
1e9b09156ab1a6545caf741f5b634afda2d8e093.gz.tbi 1.27 MB 288463f9c104ab48a00e95775025066c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 9712326a7102ab2d1e7e9bd131e4a18c
statistics/