Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/20b329c57cb22a0e2b3f1c170608de3f10c32a37content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 20b329c57cb22a0e2b3f1c170608de3f10c32a37
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AACCTCCTCCTTCTAG-2362_1_D05, TATGGATGTGTGCACG-2362_1_D05, AATCTTGAGCGATAGA-2362_1_D05, GTTTCAGCAAGGTAAC-2362_1_D05, GAGTGATCATAGCGAG-2362_1_D05 (top 5 of 4876 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
20b329c57cb22a0e2b3f1c170608de3f10c32a37.gz 1.96 GB 5ca584e7405096f2ab3a3897d27513b1
20b329c57cb22a0e2b3f1c170608de3f10c32a37.gz.tbi 1.03 MB fae30a83d0b9bc2d46135661a75ff2e5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 40d9c056e5b13c1844ce67fb95001235
statistics/