Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/21b13da435317922136516f4ea4e27943907579ccontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 21b13da435317922136516f4ea4e27943907579c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCGAGTGAGACAGGCG-2295_C02, GGCGGTAAGCCTGTGA-2295_C02, CACAGGGAGGATGATG-2295_C02, GAACACAAGTAGGCGG-2295_C02, TATCGCGAGGAGGTTA-2295_C02 (top 5 of 2490 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
21b13da435317922136516f4ea4e27943907579c.gz 1.14 GB 5511f57d33821448d6a4e6a6c0da2687
21b13da435317922136516f4ea4e27943907579c.gz.tbi 826.51 KB 4b025f0c0c68a05e1a5263c074ac65a0
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 61cb0682b812eef1f0e7e714bd627720
statistics/