Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/22653d611d9edbe704eab070521891d5864eef82content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 22653d611d9edbe704eab070521891d5864eef82
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGAACCTGTTATGTGG-2526_E01, TATCCAGCATAACGGG-2526_E01, AAGGTCAAGAGAGCCG-2526_E01, AATCAGGAGCATGCAT-2526_E01, AATTAGCGTCCGTAGG-2526_E01 (top 5 of 5465 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
22653d611d9edbe704eab070521891d5864eef82.gz 1.95 GB 3bb06cb4eaf18c7fa722ebf34b34642a
22653d611d9edbe704eab070521891d5864eef82.gz.tbi 1.04 MB 70ac80bc3bed30a24b2c1d6c2c297f0f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB ac7ac98b5ee16b5e284d1509c1a77d3d
statistics/