Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/237fca61a138a6c86f149b0271a293f75f8e4a0bcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 237fca61a138a6c86f149b0271a293f75f8e4a0b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTGAGGCGTCCGTGAG-847_A04, GTGGATGCACCTGTAA-847_A04, TGACTCCTCGTTAAGC-847_A04, AATGCGCGTCTTACTA-847_A04, TGAGGAGGTTTAGCTC-847_A04 (top 5 of 7847 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
237fca61a138a6c86f149b0271a293f75f8e4a0b.gz 3.56 GB e31b23c522d6bd1da70c18a551afd0a6
237fca61a138a6c86f149b0271a293f75f8e4a0b.gz.tbi 1.43 MB 00daeda5dc016bae9f1e96721b545a84
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 0209fdf11f9398c2422fb7e13dc16a7a
statistics/