Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/257acbad4daec630edb9e1275971e151093a9b97content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 257acbad4daec630edb9e1275971e151093a9b97
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCTATTTAGTTATGTG-2229_A06, GGCGCTAGTCTTGCAT-2229_A06, ACGACAAAGGTGTTAC-2229_A06, TACGTTAAGGAACCGG-2229_A06, GCCAGGTTCTCAATAG-2229_A06 (top 5 of 3640 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
257acbad4daec630edb9e1275971e151093a9b97.gz 1.42 GB 1ee920ee9e21fc8ce92e979ebbd2ef77
257acbad4daec630edb9e1275971e151093a9b97.gz.tbi 913.61 KB 08daf21c2cf70b93f228542363d2089c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB c59e03bff39a7f0625f6e8fe3bfc9105
statistics/