Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/278deafe4dbebd073c09c92a9764101cd4bcfc35content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 278deafe4dbebd073c09c92a9764101cd4bcfc35
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTCAGGAGCTTAGTA-2459_A05, AGTAACGAGCTATGAC-2459_A05, GGGTGTTGTGTTTGCT-2459_A05, TCAGGTTAGCTGGAAA-2459_A05, GTGGACACAGCATGAG-2459_A05 (top 5 of 4340 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
278deafe4dbebd073c09c92a9764101cd4bcfc35.gz 1.77 GB f8a7556f6dfdad90dfc5e3669bd66d56
278deafe4dbebd073c09c92a9764101cd4bcfc35.gz.tbi 1002.01 KB 82a32763314492c92b6ada7e8e9dc4b8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 5d0826588e07f6b2700c20d9aec84877
statistics/