Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/28b1328cb33f27766dc9975af8a67e1f0a768a18content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 28b1328cb33f27766dc9975af8a67e1f0a768a18
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGGCCTAGTTACCGGG-1458_A09, GATTTGCAGTTAACCA-1458_A09, GCTGAGGAGGGCCATC-1458_A09, CGCATATAGGTTAGCT-1458_A09, TATTCGTTCATGGTTA-1458_A09 (top 5 of 717 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
28b1328cb33f27766dc9975af8a67e1f0a768a18.gz 188.09 MB 6daa4ef162701be0a923cb25d3e1a489
28b1328cb33f27766dc9975af8a67e1f0a768a18.gz.tbi 564.23 KB 9f7160133e3c69403c79a55782d04f19
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 27e938f83e7e514d5d698616485d7314
statistics/