Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/28d26aee9ac4a3057513a5c9c9dfdef178c07e9ccontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 28d26aee9ac4a3057513a5c9c9dfdef178c07e9c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAGCTCAAGGCTACTG-988_E05, AGTTGTCAGGAAGCTA-988_E05, TGAGCCGGTTGGTGAC-988_E05, GTATTGTCAACCTGGT-988_E05, GAGCCACTCGATTATG-988_E05 (top 5 of 7609 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
28d26aee9ac4a3057513a5c9c9dfdef178c07e9c.gz 1.73 GB e0dd7d71ffe5e3e97f44428ccaaa0802
28d26aee9ac4a3057513a5c9c9dfdef178c07e9c.gz.tbi 978.33 KB 9ac832616e633188aff993ae08a8577a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB d282f07c321f174458b5d3ce9ce80f7e
statistics/