Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/2ce39e90e70fb8372c214b72225f215a58fd1a4ccontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 2ce39e90e70fb8372c214b72225f215a58fd1a4c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GACATAGAGTGAGCAA-2508_B07, CGGTTTGAGGCTTAGT-2508_B07, TGGACGGAGTTTCCTG-2508_B07, TACGTTAAGCGCTCAA-2508_B07, CACAATATCCTAGTCC-2508_B07 (top 5 of 3024 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
2ce39e90e70fb8372c214b72225f215a58fd1a4c.gz 1.71 GB 1eed869b836ab9cd0adc95b0ae089918
2ce39e90e70fb8372c214b72225f215a58fd1a4c.gz.tbi 995.81 KB e8277ba4e6be208617615e8b4418c043
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 6e6c7c8cc8e2f71d89b7ae6f73beaa2e
statistics/