Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3087a8cfb40737d90e0e92fe4d4d2e618504df1fcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3087a8cfb40737d90e0e92fe4d4d2e618504df1f
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCTAAGTTCCGGCTAA-930_E05, CTGGTTACAGTGAACG-930_E05, CTGCAATAGAGAAGGG-930_E05, AGCTTTAAGCGATAAG-930_E05, GCAAGTCGTTGAGCCG-930_E05 (top 5 of 3655 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3087a8cfb40737d90e0e92fe4d4d2e618504df1f.gz 2.19 GB 5bd3fce07789cf989806bc72dda9d52f
3087a8cfb40737d90e0e92fe4d4d2e618504df1f.gz.tbi 1.09 MB ab487e63e6ccbcf1510cdded5afc7bd2
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB c60fca42f70ad589dedd793a3b84df22
statistics/