Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/31086fc804b4adfb5d6eefce81d536404e1a3126content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 31086fc804b4adfb5d6eefce81d536404e1a3126
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGCCATCAGCTGGAAA-1091_A05, GGAGTGAGTGGAGCAA-1091_A05, CGAAGCCTCGCTAAAC-1091_A05, TTGGGTTAGGTGAAGC-1091_A05, AAACGTACAGCAAGTG-1091_A05 (top 5 of 5498 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
31086fc804b4adfb5d6eefce81d536404e1a3126.gz 2.07 GB 07d7eb684f67d2098ee51e970f8b62b0
31086fc804b4adfb5d6eefce81d536404e1a3126.gz.tbi 1.08 MB ffd6d46ad689a226514bd5bb2ac419e1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 69a40899c7ea54145a69019f25ce50f1
statistics/