Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/330eec09db45351ac25246472720007ccbe87d04content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 330eec09db45351ac25246472720007ccbe87d04
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGAGCGAAGTGCACGC-2346_A06, CTAGCTGAGTCATTTC-2346_A06, GCGTTTCTCGACAAAG-2346_A06, CACCTCAGTTCCGGCT-2346_A06, AGTTGGCGTGAGACTC-2346_A06 (top 5 of 3951 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
330eec09db45351ac25246472720007ccbe87d04.gz 1.73 GB aa850dbf6c426a6a88d35cb17a8c1419
330eec09db45351ac25246472720007ccbe87d04.gz.tbi 1.01 MB cf01e78f51788de0d8ebe6d0b8854410
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 693138c6259804d348f3da285bbceaf9
statistics/