Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/345ba40bce2798988bfcafadadde06022ace7104content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 345ba40bce2798988bfcafadadde06022ace7104
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTCTTAGGTGAGGTAG-1477_A07, AATAGAGGTTAGTGAT-1477_A07, ACAGCGCTCTAACCTT-1477_A07, GAGAGGCGTAACTACG-1477_A07, AGCCTAAGTGTTAAAC-1477_A07 (top 5 of 3511 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
345ba40bce2798988bfcafadadde06022ace7104.gz 1007.21 MB b613ca63405aeeff7491209cd0d8183c
345ba40bce2798988bfcafadadde06022ace7104.gz.tbi 770.55 KB f9c4f68a715db0d684e0ab2bd92715b9
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 44d3c3df697a006cd9ee300492753bc1
statistics/