Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/35048332360a3bbe252e345b025fb2ae7070b96ccontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 35048332360a3bbe252e345b025fb2ae7070b96c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTCATGAGTTAGGTTG-1279_A07, TATCGCACAGCCTGCA-1279_A07, ATGTTGTCACAGGAAT-1279_A07, CGTCCTAGTCCGTGAG-1279_A07, CGTGCTGCACCTGTAA-1279_A07 (top 5 of 2104 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
35048332360a3bbe252e345b025fb2ae7070b96c.gz 734.5 MB 3ee5346de8e942f5a749cb66f9380480
35048332360a3bbe252e345b025fb2ae7070b96c.gz.tbi 701.7 KB 980f9d32bea666c17b1eb50a0db4704c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 8c7c26f72f58b9d7f3f258554857934a
statistics/