Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/382c7182ad442711600f409f1c80c6e7349dac23content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 382c7182ad442711600f409f1c80c6e7349dac23
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TAGCGGACAACGTGCT-2305_E01, CATCACACAAGGACCA-2305_E01, CGGTGAGAGTGAGGGT-2305_E01, TCAGCCTTCTTGCAAA-2305_E01, GATCAGGCAACTAGAA-2305_E01 (top 5 of 5055 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
382c7182ad442711600f409f1c80c6e7349dac23.gz 2.09 GB 8d43bfee2ce0f3fe97d1f35114662981
382c7182ad442711600f409f1c80c6e7349dac23.gz.tbi 1.09 MB 12d3079688ae3a1b2cb6240558cdbe44
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 4f7d5aa11a5be9fa7ba1c545839cd077
statistics/