Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/38c93760ac78dc15675444f40186eea935b540a8content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 38c93760ac78dc15675444f40186eea935b540a8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAGAATCTCAAAGGCA-2386_A02, CAGGGCTTCATTAGCA-2386_A02, GAGAACCAGTAACAGG-2386_A02, GTGGATGCAAGGAATC-2386_A02, GTGTAACTCGTCAAGT-2386_A02 (top 5 of 8148 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
38c93760ac78dc15675444f40186eea935b540a8.gz 2.42 GB 8bbdf58cbba983ee5b288aa04ac3cd4a
38c93760ac78dc15675444f40186eea935b540a8.gz.tbi 1.16 MB 3bd2ef54ef3e793fb1db4241f0e14a30
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 99a547b82f3dc5a48daeec561bc598df
statistics/