Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/39ea42d0e2e15970e3c51736a5b5d0207d728aa7content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 39ea42d0e2e15970e3c51736a5b5d0207d728aa7
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GAGAAACGTTTACCGT-2275_D02, TTAAGTGTCCGCCAAA-2275_D02, CTACCGGCAAAGCGGC-2275_D02, GATTATGTCTTGCAGG-2275_D02, ACACTAATCGCACAAT-2275_D02 (top 5 of 5132 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
39ea42d0e2e15970e3c51736a5b5d0207d728aa7.gz 3.0 GB 55c583ea4ad8c65a2110b3212afb9ccd
39ea42d0e2e15970e3c51736a5b5d0207d728aa7.gz.tbi 1.34 MB 970317a9f275bb2d5e1300b1918e11b7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 9837fd5801d44b73b0740029f5e97d85
statistics/