Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/39f15ad2da2e3b3f16f5cea5735d0a0cec6586bccontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 39f15ad2da2e3b3f16f5cea5735d0a0cec6586bc
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGATGCTTCCCTCAGT-2235_E03, TAATCACCAGGCTTGT-2235_E03, GGCTGAGAGTGTTGCG-2235_E03, TGAAGTGAGTTGGCCA-2235_E03, GCGCCTTGTAGCTGGT-2235_E03 (top 5 of 8271 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
39f15ad2da2e3b3f16f5cea5735d0a0cec6586bc.gz 2.11 GB 815cad6464169bda619e4d1c05268e46
39f15ad2da2e3b3f16f5cea5735d0a0cec6586bc.gz.tbi 1.08 MB dac1603fd12537dfed6036fd0205cfd3
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 4cfe4d6ed5b77b51f9e0710670f3f1c5
statistics/