Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3a819f63e0d81fc9225e04d661d8c46fa651f252content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3a819f63e0d81fc9225e04d661d8c46fa651f252
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ACTCACTGTAGCCATA-2006_B05, TGTTAGCAGCCGCAGT-2006_B05, ATGGCCCAGCTAAGTC-2006_B05, TTTGGCTGTCTAACCT-2006_B05, CTGTTTAGTGCACGCA-2006_B05 (top 5 of 6224 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3a819f63e0d81fc9225e04d661d8c46fa651f252.gz 2.79 GB a100dcd2ec1b6574f3af93e4441ede5a
3a819f63e0d81fc9225e04d661d8c46fa651f252.gz.tbi 1.26 MB 66ee8d53dfa0e569ef4e69047709d6dd
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 6dfb0471883965ef65af5d41600749f8
statistics/