Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3bc34b39fcc7970ffd907e30eece54975fbc4b04content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3bc34b39fcc7970ffd907e30eece54975fbc4b04
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AAGTGAAGTTGGTGAC-847_D04, CAATAAGCAACAGGAT-847_D04, GACCGTTCAGCAAGAT-847_D04, AGAACCAAGGTGTTAC-847_D04, TATGGGCGTCCCGGAA-847_D04 (top 5 of 2908 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3bc34b39fcc7970ffd907e30eece54975fbc4b04.gz 1.52 GB ed1645310e1230d0d3a880106bbeca11
3bc34b39fcc7970ffd907e30eece54975fbc4b04.gz.tbi 1009.51 KB a38664a496916a8d4d7340bf31b0b06d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 62af2e0ce7f8f885a44d7d6d071226c5
statistics/