Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3c45a782edfbaaece106514b21fda33e72517bdbcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3c45a782edfbaaece106514b21fda33e72517bdb
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ATTGTCCGTAACCTAG-1001_A06, GATTCGCCACTAGGTC-1001_A06, TGGTTGAGTACGCGCA-1001_A06, GCCTGTGCACGGTTTA-1001_A06, GTCTTTAGTTTAGTCC-1001_A06 (top 5 of 2532 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3c45a782edfbaaece106514b21fda33e72517bdb.gz 643.12 MB 875700eb5cd8493ea7f3f9c7fb3542dc
3c45a782edfbaaece106514b21fda33e72517bdb.gz.tbi 669.34 KB 4fa874221b2e5fc7f7c97e1bb78792e8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 993000e43ba12c382a64e0394a0a6a4a
statistics/