Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3e72981f0bfa990c8698b23ae8eefd18d4822dd8content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3e72981f0bfa990c8698b23ae8eefd18d4822dd8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTTGTGGCAATATAGG-2018_D01, GTTTGTCGTCAATAGT-2018_D01, TGAGGTGCAATGCCTA-2018_D01, TCCTTGCAGCGATACT-2018_D01, TTTACGAAGGTTACAC-2018_D01 (top 5 of 1886 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3e72981f0bfa990c8698b23ae8eefd18d4822dd8.gz 793.7 MB bbab38e524e4de666efa5ba8834ed8c0
3e72981f0bfa990c8698b23ae8eefd18d4822dd8.gz.tbi 719.01 KB 8e608363da869f71682f3cf69ac2c944
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB bd6e40c2923310b0d8169c592d13cbe0
statistics/