Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3e7aceb10f4ccc66e4c5dbff9566f255644f63f1content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3e7aceb10f4ccc66e4c5dbff9566f255644f63f1
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGGTGTTGTAACAGGG-2256_C03, CGCAATAGTTGAGGTC-2256_C03, GGGCTAACATGAATAG-2256_C03, TCCAGGATCCGCCAAA-2256_C03, TCCATCATCCAGGTTG-2256_C03 (top 5 of 5477 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3e7aceb10f4ccc66e4c5dbff9566f255644f63f1.gz 3.98 GB e393aea48af4fb629e2e83dc24235af7
3e7aceb10f4ccc66e4c5dbff9566f255644f63f1.gz.tbi 1.52 MB 9fb68f251fdfaa82daf80417fb495207
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB f7dbcbb90888f5f0f8201be9f21fb003
statistics/