Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3ee91edac530b1f0f50268ea918db6986a02ded9content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3ee91edac530b1f0f50268ea918db6986a02ded9
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTCCAAGTCGTTAGCG-988_D05, CTCACTCAGGAGTCGG-988_D05, GCACGGTTCATTTGTC-988_D05, TTTGTCCCAGAGAGCC-988_D05, GAGCTGCTCCATCAGG-988_D05 (top 5 of 7040 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3ee91edac530b1f0f50268ea918db6986a02ded9.gz 2.28 GB ab42dd506a2bacecfd1ef75e6aa4677b
3ee91edac530b1f0f50268ea918db6986a02ded9.gz.tbi 1.17 MB 71fe4b05a1fd79704fc94bc5fc1fdd13
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 1400f60a5249b05ab29be60d1ef169c2
statistics/