Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/3f8802c4845985e8290a1041514906b38de36452content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3f8802c4845985e8290a1041514906b38de36452
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCCAATAGTTGTTCAC-2018_B01, CATCCTCAGAGGAGTC-2018_B01, AAACCGCGTGTCCAGG-2018_B01, ACTTTGTTCATTAGTG-2018_B01, CAAACATGTAACCACA-2018_B01 (top 5 of 6060 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3f8802c4845985e8290a1041514906b38de36452.gz 3.56 GB 90c938a39f684abb5cb6a51b564b0fa3
3f8802c4845985e8290a1041514906b38de36452.gz.tbi 1.45 MB 0bc04c31d02a998bb2dfa68bccd06b39
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB acf6b72ed7c5f49efba4833363a34faf
statistics/