Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/40905f2c12ee49177f6f0829bb9ea35a9068674dcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 40905f2c12ee49177f6f0829bb9ea35a9068674d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGAGCGAAGTGAACGA-2306_A02, CTGTTGGAGTAGAGGC-2306_A02, GAGCTAGCAGGCCTTG-2306_A02, TTAGGCTAGGCCGGAA-2306_A02, ACCAATATCCTAACGG-2306_A02 (top 5 of 4406 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
40905f2c12ee49177f6f0829bb9ea35a9068674d.gz 2.96 GB 7a07a4ee7f400fab6ee6d658829dbe3a
40905f2c12ee49177f6f0829bb9ea35a9068674d.gz.tbi 1.32 MB 4b85cd5d52ff1d6e1e707681d8dda738
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 679f682fe2a57451511c783edfef59a6
statistics/