Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/4141b6cae5886c1f704720fe4c10eabe2a53d373content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 4141b6cae5886c1f704720fe4c10eabe2a53d373
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTCTCACAGGTCCTGA-2511_A02, TAGTGGCGTTACAAAC-2511_A02, AAGACCAAGTTATGTG-2511_A02, AACGACAAGTGAGGGT-2511_A02, GCTCACAAGATAACCC-2511_A02 (top 5 of 3001 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
4141b6cae5886c1f704720fe4c10eabe2a53d373.gz 1.14 GB 6c74a49c2f8600ccecfa059db3a43252
4141b6cae5886c1f704720fe4c10eabe2a53d373.gz.tbi 853.9 KB 864232795b64c217d98fadf6b9967aa5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB d24cecd8b3feeccdb00fec1309b2be4a
statistics/