Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/42ad0f8f397baae5a90c26ad566b2161169f3496content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 42ad0f8f397baae5a90c26ad566b2161169f3496
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGCTACGTCGATTATG-2328_B03, GCAGGAAGTGTCCTGC-2328_B03, GCGGGTTTCCACCTGT-2328_B03, ATGAGCCGTTGTTGTC-2328_B03, TCGCTAACATAGTCAT-2328_B03 (top 5 of 3110 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
42ad0f8f397baae5a90c26ad566b2161169f3496.gz 1.23 GB 797a3db13429534dc892bec41b1982bb
42ad0f8f397baae5a90c26ad566b2161169f3496.gz.tbi 852.8 KB 1f68fc3014d6f8ff77a2e172d1c93b66
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB dcb33de2e6be5de5fc12f90c70a5b440
statistics/