Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/45f1425ec9e97b7f278b6308116a90a77d2e82edcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 45f1425ec9e97b7f278b6308116a90a77d2e82ed
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TAAGGACCATAAAGCA-2305_B01, ATGCTTAAGCTTTGTT-2305_B01, TTCCTTGAGGGCCACT-2305_B01, TTGGCTGAGGGCTTTG-2305_B01, ACGAGTAAGTAACTCA-2305_B01 (top 5 of 752 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
45f1425ec9e97b7f278b6308116a90a77d2e82ed.gz 618.71 MB 2d5bfed036c5077b3942a72a7b35d832
45f1425ec9e97b7f278b6308116a90a77d2e82ed.gz.tbi 678.64 KB 775ffaed3216f26576e35fe27be95faf
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 9975f391d18dcf0321cb10c0a2e80f99
statistics/